PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G129600.1
Common NameB456_004G129600, LOC105791300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 464aa    MW: 52001.9 Da    PI: 6.6326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G129600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13292337454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er RR+++N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Gorai.004G129600.1 292 NHVEAERLRREKLNHRFYALRSVVPTV-----SKMDKASLLSDAVAYIKEL 337
                         799***********************6.....5****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-4721198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.199288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-18290355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16291349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-14291341No hitNo description
PfamPF000101.0E-10292337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-16294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSSSSSSSMI SFGLDAPPPT LQQRLQFIVQ SRPEWWVYSI FWQASRDAHG RLVFSWGDGY  60
FQGTKGFAGK SGNKLSQPRF GRRRSGEEIQ SVFCEEIDIE RMVDGDVTDY EWYYTVSVNR  120
SFAIGDDILG KAFGSGSYIW LCGDQELQLY ECERVTEARM RGIQTLVFLS TSFGVVELGS  180
SEMIQENWSL VQLAKSIFGS EINCLGSKHP GLESQLQMST QTVPFLDFGK VASDQKEWIL  240
DDRKQQIEAK KDNCVLLRPL SSDSGADSEM EFSVGSKKRG RKSGTGKTTP SNHVEAERLR  300
REKLNHRFYA LRSVVPTVSK MDKASLLSDA VAYIKELRSQ IDKLDVKLKV QSQKAKLNAI  360
NVSNNQRNAS TFDSTRPTYD YGPNTMEVDV KIIGSEAMIR VQCPDVNYPA ARLMDALRDL  420
ELHVHHASVS TVNELVLQDV VVILPAGFIS EEMLRTAIFQ RCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-29201988192Transcription factor MYC3
4rqw_B5e-29201988192Transcription factor MYC3
4rs9_A5e-29201988192Transcription factor MYC3
4yz6_A5e-29201988192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474774.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A0D2PB730.0A0A0D2PB73_G
STRINGPOPTR_0001s11400.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-66bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]